Israeli media reported that the soldier admitted to having intercourse with the Palestinian in the prison.
The woman is believed to be on compulsory military service.
In Israel, women have to serve at least 24 months and men at least 32 months.
According to the BBC, the names of the soldier and the prisoner have not been released.
The court also ordered that the prison in which the incident took place be kept secret.
According to Israeli media, the soldier claimed in his testimony that four other women had sexual intercourse with the same man.
"By mid-2025, there will not be a single female soldier in high security prisons," Security Minister Gvir said.
There have been previous public calls for the removal of female soldiers from these prisons, but no action has been taken due to a lack of adequate replacements.
Israeli female soldier had sexual intercourse with detainee
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